Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6895

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15262 and 15263 are separated by 247 nucleotides mRNA_6894: 15262 - K14326 UPF1, RENT1 regulator of nonsense transcripts 1, at 375,267 to 378,241 15262 mRNA_6895: 15263 - K18183 COX19 cytochrome c oxidase assembly protein subunit 19, at 378,489 to 378,951 15263

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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378,311 - -0.1
378,331 + +1.5
378,331 - +2.2
379,476 - +0.7
379,480 - +0.3
379,488 - +0.5
379,488 + +0.4
379,497 + -0.1
379,778 - -0.1
379,810 - +0.2
379,934 - +1.5

Or see this region's nucleotide sequence