Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6896

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15264 and 15265 are separated by 620 nucleotides mRNA_6896: 15264 - KOG1399 Flavin-containing monooxygenase, at 380,305 to 381,908 15264 mRNA_6897: 15265 - Hypothetical Protein, at 382,529 to 383,336 15265

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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379,476 - +0.7
379,480 - +0.3
379,488 - +0.5
379,488 + +0.4
379,497 + -0.1
379,778 - -0.1
379,810 - +0.2
379,934 - +1.5
380,242 - +0.3
380,492 - 15264 mRNA_6896 0.12 +1.1
380,526 + 15264 mRNA_6896 0.14 +0.7
380,863 - 15264 mRNA_6896 0.35 +3.4
380,990 - 15264 mRNA_6896 0.43 +1.7
381,402 + 15264 mRNA_6896 0.68 +0.2
381,603 + 15264 mRNA_6896 0.81 +0.6
381,697 - 15264 mRNA_6896 0.87 -0.7
381,702 - 15264 mRNA_6896 0.87 +1.0
382,017 + -0.0
382,147 + +1.0
382,149 - -0.1
382,181 - -1.1
382,188 - +1.1
382,196 + +0.8
382,221 + +0.0
382,237 + +0.5
382,238 - +0.7
382,238 - +3.4
382,243 + +0.4
382,251 + +0.5
382,261 + +0.2
382,261 - +0.3
382,264 + +0.7
382,264 - +0.7
382,268 + +0.1
382,269 + +0.1
382,270 + +0.5
382,272 + -0.0
382,277 - -0.0
382,295 + +1.8
382,306 - -0.6
382,309 + -0.6
382,310 - -0.9
382,311 - +0.3
382,325 - +0.6
382,337 + -0.7
382,339 + +1.0
382,340 + +0.6
382,342 - +0.5
382,344 + +2.0
382,351 + -0.2
382,379 + +1.9
382,471 + +0.5
382,490 + -0.1
382,494 + -1.8
382,499 - +0.3
382,508 + +0.1
382,512 + -0.1
382,513 + +0.4
382,535 + +0.7
382,652 - 15265 mRNA_6897 0.15 -0.8
382,662 + 15265 mRNA_6897 0.16 +1.4
382,662 + 15265 mRNA_6897 0.16 -0.6
382,769 - 15265 mRNA_6897 0.30 +1.2

Or see this region's nucleotide sequence