Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6907

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15273 and 15274 are separated by 346 nucleotides15274 and 15275 are separated by 159 nucleotides15275 and 15276 are separated by 570 nucleotides mRNA_6905: 15273 - K14300 NUP133 nuclear pore complex protein Nup133, at 397,122 to 402,305 15273 mRNA_6906: 15274 - Hypothetical Protein, at 402,652 to 403,078 15274 mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403,238 to 404,908 15275 mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405,479 to 408,297 15276

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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402,358 - +0.2
402,364 - +0.6
402,370 - +1.2
402,370 + +1.9
402,378 - +0.2
402,394 + -0.6
402,530 + -0.6
402,648 - -0.0
402,784 - 15274 mRNA_6906 0.31 -1.6
403,075 - -0.5
403,260 - +1.8
403,260 - -0.4
403,388 - +0.1
405,288 + -0.1
405,310 + +1.2
405,310 - -3.2
405,319 + -2.2
405,327 - +2.2
405,341 + -0.1
405,355 - -0.8
405,448 - +2.5
405,452 - -0.8
405,486 - -0.4
405,494 + +0.5
405,738 - +1.5
405,739 + -0.5

Or see this region's nucleotide sequence