Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6919

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15286 and 15287 are separated by 252 nucleotides15287 and 15288 are separated by 584 nucleotides mRNA_6918: 15286 - HMMPfam-Coiled-coil domain-containing protein 56-PF09813, at 430,003 to 430,506 15286 mRNA_6919: 15287 - K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2, at 430,759 to 431,959 15287 mRNA_6920: 15288 - BLAST GTP binding protein 2 [Moniliophthora roreri MCA ..., at 432,544 to 434,015 15288

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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429,784 + -0.1
429,786 - +0.8
429,799 - +0.6
430,705 - -2.8
430,722 - +0.3
432,045 + +0.1
432,174 - -0.5
432,247 - +0.4
432,323 + +1.0
432,334 - -0.0
432,350 - -0.4
432,363 + -0.7
432,458 + +0.5
432,461 + -0.7
432,471 + -0.0
432,489 - +0.3
432,496 + -1.8
432,497 - -0.9
432,767 + 15288 mRNA_6920 0.15 +0.2
432,774 - 15288 mRNA_6920 0.16 +0.1
432,925 + 15288 mRNA_6920 0.26 +0.8

Or see this region's nucleotide sequence