Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7124

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15491 and 15492 are separated by 248 nucleotides15492 and 15493 are separated by 513 nucleotides mRNA_7123: 15491 - K00683 QPCT glutaminyl-peptide cyclotransferase, at 932,672 to 934,092 15491 mRNA_7124: 15492 - K02872 RP-L13Ae, RPL13A large subunit ribosomal protein L13Ae, at 934,341 to 935,492 15492 mRNA_7125: 15493 - K11315 TADA3, ADA3, NGG1 transcriptional adapter 3, at 936,006 to 938,465 15493

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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933,357 - 15491 mRNA_7123 0.48 -1.8
933,365 + 15491 mRNA_7123 0.49 +0.1
933,655 + 15491 mRNA_7123 0.69 -0.7
933,661 + 15491 mRNA_7123 0.70 +0.7
933,680 - 15491 mRNA_7123 0.71 +2.1
933,956 - +0.7
933,957 + -1.2
933,961 - +1.1
933,963 - +0.8
933,982 + +0.3
934,101 + +0.0
934,124 - +1.6
934,138 + +0.4
934,147 + -0.0
934,277 + -0.9
935,741 + -0.4
935,767 + +1.0
935,785 - -0.9
935,789 + +0.0
935,902 + -1.0
935,930 + -2.2
936,054 + +0.5

Or see this region's nucleotide sequence