Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7138

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15505 and 15506 are separated by 224 nucleotides15506 and 15507 are separated by 152 nucleotides mRNA_7137: 15505 - KOG1933 Cholesterol transport protein (Niemann-Pick C disease protein), at 964,045 to 968,474 15505 mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968,699 to 969,330 15506 mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969,483 to 971,578 15507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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967,721 + 15505 mRNA_7137 0.83 -1.2
968,030 - 15505 mRNA_7137 0.90 -1.8
968,150 - -1.2
968,182 + -2.3
968,294 - -2.0
968,306 - -1.1
968,359 + -0.2
968,457 + -0.2
968,602 - +2.0
968,623 - +1.0
968,650 + +0.1
968,654 - +0.4
969,353 - +0.0
969,376 - +0.4
969,501 - +0.4
969,508 - +2.5
969,520 + -0.3
969,621 + +0.0
969,964 + 15507 mRNA_7139 0.23 +0.9
969,995 + 15507 mRNA_7139 0.24 +1.0
970,005 - 15507 mRNA_7139 0.25 -0.5
970,239 + 15507 mRNA_7139 0.36 +1.9
970,277 + 15507 mRNA_7139 0.38 +1.1

Or see this region's nucleotide sequence