Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7258

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15625 and 15626 are separated by 684 nucleotides15626 and 15627 are separated by 197 nucleotides mRNA_7257: 15625 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 1,233,566 to 1,236,513 15625 mRNA_7258: 15626 - K11378 SAS3 histone acetyltransferase SAS3, at 1,237,198 to 1,241,619 15626 mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103 15627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,236,317 - +0.7
1,236,379 - +0.8
1,236,567 + +0.4
1,236,586 + +0.8
1,236,878 - -0.8
1,237,168 - +1.5
1,237,246 - +0.4
1,237,325 + -0.5
1,237,414 - -1.3
1,237,545 + +1.7
1,237,733 - 15626 mRNA_7258 0.12 +2.0
1,237,741 + 15626 mRNA_7258 0.12 +0.9
1,237,770 - 15626 mRNA_7258 0.13 +1.9
1,237,780 - 15626 mRNA_7258 0.13 -1.3
1,237,943 - 15626 mRNA_7258 0.17 -0.1
1,238,015 + 15626 mRNA_7258 0.18 +0.3
1,238,299 + 15626 mRNA_7258 0.25 +1.3
1,238,352 - 15626 mRNA_7258 0.26 +0.7
1,238,364 + 15626 mRNA_7258 0.26 +2.0
1,238,575 - 15626 mRNA_7258 0.31 -0.9
1,238,620 + 15626 mRNA_7258 0.32 -0.9
1,238,737 - 15626 mRNA_7258 0.35 -0.1
1,239,055 + 15626 mRNA_7258 0.42 +0.5
1,239,068 + 15626 mRNA_7258 0.42 -0.3
1,239,076 + 15626 mRNA_7258 0.42 -0.1
1,239,234 + 15626 mRNA_7258 0.46 -1.4
1,239,238 + 15626 mRNA_7258 0.46 +2.8
1,239,311 - 15626 mRNA_7258 0.48 -0.3
1,239,369 + 15626 mRNA_7258 0.49 +0.0
1,239,384 - 15626 mRNA_7258 0.49 +2.5
1,239,391 + 15626 mRNA_7258 0.50 +0.6
1,239,471 + 15626 mRNA_7258 0.51 +1.6
1,239,543 - 15626 mRNA_7258 0.53 -0.8
1,239,581 + 15626 mRNA_7258 0.54 -0.9
1,239,603 + 15626 mRNA_7258 0.54 +0.4
1,239,899 - 15626 mRNA_7258 0.61 +0.2
1,239,940 + 15626 mRNA_7258 0.62 -0.6
1,239,965 + 15626 mRNA_7258 0.63 -2.0
1,240,051 - 15626 mRNA_7258 0.65 -0.3
1,240,065 - 15626 mRNA_7258 0.65 +1.1
1,240,227 + 15626 mRNA_7258 0.68 -0.0
1,240,297 + 15626 mRNA_7258 0.70 -0.2
1,240,432 + 15626 mRNA_7258 0.73 +0.8
1,240,559 + 15626 mRNA_7258 0.76 +1.6
1,240,583 + 15626 mRNA_7258 0.77 -0.4
1,240,796 - 15626 mRNA_7258 0.81 -0.8
1,240,865 + 15626 mRNA_7258 0.83 +1.1
1,240,930 + 15626 mRNA_7258 0.84 +0.1
1,241,108 - 15626 mRNA_7258 0.88 +1.4
1,241,273 + -0.8
1,241,498 - -0.3
1,241,530 - +0.4
1,241,698 + -1.4
1,241,702 + +0.3
1,241,822 + +3.3
1,241,825 - -0.4
1,241,870 - +0.6

Or see this region's nucleotide sequence