Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7291

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15658 and 15659 are separated by 264 nucleotides15659 and 15660 are separated by 348 nucleotides mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291 15658 mRNA_7291: 15659 - K16803 CKAP5, XMAP215 cytoskeleton-associated protein 5, at 1,309,556 to 1,318,572 15659 mRNA_7292: 15660 - SUPERFAMILY--SSF56112, at 1,318,921 to 1,320,950 15660

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,308,944 - 15658 mRNA_7290 0.78 +0.9
1,309,093 + 15658 mRNA_7290 0.87 +0.8
1,309,260 + +1.3
1,309,346 + +0.8
1,309,418 - +1.2
1,309,423 + +1.6
1,309,428 + -0.9
1,309,460 + +1.6
1,309,702 - -0.2
1,309,851 - +1.0
1,309,860 + +1.8
1,309,947 - -0.8
1,310,130 + +1.3
1,310,160 + +1.1
1,310,311 + +1.3
1,310,500 + 15659 mRNA_7291 0.10 +2.4
1,311,124 + 15659 mRNA_7291 0.17 +0.8
1,311,825 - 15659 mRNA_7291 0.25 +0.5
1,312,453 - 15659 mRNA_7291 0.32 +2.3
1,312,601 - 15659 mRNA_7291 0.34 -1.6
1,312,601 + 15659 mRNA_7291 0.34 +1.4
1,313,172 - 15659 mRNA_7291 0.40 +0.3
1,317,071 - 15659 mRNA_7291 0.83 -1.0
1,317,081 - 15659 mRNA_7291 0.83 +1.7
1,317,126 - 15659 mRNA_7291 0.84 -0.2
1,317,187 - 15659 mRNA_7291 0.85 +1.3
1,317,221 + 15659 mRNA_7291 0.85 -0.3
1,317,245 + 15659 mRNA_7291 0.85 -0.6
1,317,349 + 15659 mRNA_7291 0.86 +1.9
1,317,353 - 15659 mRNA_7291 0.86 +0.9
1,317,668 + 15659 mRNA_7291 0.90 -0.0
1,317,674 + +0.9
1,317,912 - -0.0
1,318,197 - +0.5
1,318,204 - -1.4
1,318,323 + -1.0
1,318,355 + +0.6
1,318,631 - +1.8
1,318,640 - +0.6
1,318,785 - +1.5
1,318,794 + -1.0
1,318,803 - -1.0
1,318,942 + -2.0
1,319,053 + +0.3
1,319,080 - +1.2
1,319,106 - +0.8
1,319,321 - 15660 mRNA_7292 0.20 -0.2
1,319,365 + 15660 mRNA_7292 0.22 +0.6
1,319,514 + 15660 mRNA_7292 0.29 +0.9

Or see this region's nucleotide sequence