Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7314

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15681 and 15682 are separated by 301 nucleotides15682 and 15683 are separated by 373 nucleotides15683 and 15684 are separated by 11 nucleotides mRNA_7313: 15681 - K00417 QCR7, UQCRB ubiquinol-cytochrome c reductase subunit 7, at 1,376,085 to 1,377,067 15681 mRNA_7314: 15682 - Hypothetical Protein, at 1,377,369 to 1,379,605 15682 mRNA_7315: 15683 - K05527 bolA BolA protein, at 1,379,979 to 1,380,539 15683 mRNA_7316: 15684 - KOG4178 Soluble epoxide hydrolase, at 1,380,551 to 1,382,072 15684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,377,092 + -0.1
1,377,095 - +1.0
1,377,151 - -1.6
1,377,161 - +0.2
1,377,162 + +0.7
1,377,413 + -0.0
1,377,432 - -0.9
1,377,531 - +0.5
1,377,567 + +3.1
1,377,962 - 15682 mRNA_7314 0.27 +1.9
1,377,962 - 15682 mRNA_7314 0.27 +1.7
1,378,235 + 15682 mRNA_7314 0.39 -0.2
1,378,547 + 15682 mRNA_7314 0.53 -0.1
1,379,293 + 15682 mRNA_7314 0.86 +2.0
1,379,321 - 15682 mRNA_7314 0.87 +1.3
1,379,426 - -0.0
1,379,433 + +1.1
1,379,439 + +0.9
1,379,463 + -0.4
1,379,707 - +0.1
1,379,751 + -0.8
1,379,756 + +1.1
1,379,891 + +0.1
1,379,901 - +0.6
1,379,980 + +0.3
1,379,983 - +0.9
1,380,090 + 15683 mRNA_7315 0.20 +1.7
1,380,151 + 15683 mRNA_7315 0.31 +2.1
1,380,276 - 15683 mRNA_7315 0.53 -1.9

Or see this region's nucleotide sequence