Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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14 + +0.7
14 + -1.8
14 + +1.6
14 + +1.6
22 + +0.6
29 + +0.6
35 + -0.4
45 + +0.4
66 + -0.3
68 + +0.8
71 - -3.4
105 + +0.3
120 - +0.6
120 + +0.1
121 - +0.6
122 - +2.2
126 + +2.1
126 + -0.2
131 - +0.2
135 - +0.4
135 + -1.1
135 + +0.4
135 + -0.1
135 - +1.2
142 - +0.6
148 + -0.8
153 + +0.7
159 - -0.4
159 - -0.9
161 + -0.5
168 - -0.0
195 + +0.5
233 + +0.6
263 + 15688 mRNA_7320 0.11 -0.1
267 - 15688 mRNA_7320 0.11 -1.1
301 - 15688 mRNA_7320 0.14 +0.0
310 - 15688 mRNA_7320 0.14 -0.3
313 + 15688 mRNA_7320 0.15 -1.4
313 + 15688 mRNA_7320 0.15 +1.1
319 + 15688 mRNA_7320 0.15 +0.5
322 - 15688 mRNA_7320 0.15 +1.1
340 - 15688 mRNA_7320 0.16 +1.1
345 + 15688 mRNA_7320 0.17 +0.5
357 + 15688 mRNA_7320 0.18 +2.1
359 + 15688 mRNA_7320 0.18 +0.8
365 - 15688 mRNA_7320 0.18 -1.2
401 - 15688 mRNA_7320 0.21 -1.3
401 - 15688 mRNA_7320 0.21 -0.7
401 + 15688 mRNA_7320 0.21 -2.0
405 + 15688 mRNA_7320 0.21 -1.4
415 + 15688 mRNA_7320 0.22 +0.7
428 - 15688 mRNA_7320 0.23 -0.1
461 - 15688 mRNA_7320 0.25 +0.1
462 + 15688 mRNA_7320 0.25 +0.3
466 - 15688 mRNA_7320 0.25 +0.4
482 + 15688 mRNA_7320 0.26 +1.6
488 - 15688 mRNA_7320 0.27 -0.9
573 - 15688 mRNA_7320 0.33 -0.2
594 - 15688 mRNA_7320 0.34 +1.2
595 + 15688 mRNA_7320 0.34 +0.8
595 + 15688 mRNA_7320 0.34 +0.6
625 - 15688 mRNA_7320 0.36 +0.0
644 + 15688 mRNA_7320 0.38 +2.8
644 + 15688 mRNA_7320 0.38 +2.9
648 + 15688 mRNA_7320 0.38 +1.1
654 - 15688 mRNA_7320 0.38 +1.1
654 + 15688 mRNA_7320 0.38 +2.3
713 + 15688 mRNA_7320 0.43 -0.7
753 - 15688 mRNA_7320 0.45 +0.1
756 - 15688 mRNA_7320 0.46 -0.4
763 + 15688 mRNA_7320 0.46 +0.2
765 + 15688 mRNA_7320 0.46 +0.5
778 + 15688 mRNA_7320 0.47 -1.2
811 - 15688 mRNA_7320 0.49 +0.9
921 + 15688 mRNA_7320 0.57 +1.7
945 + 15688 mRNA_7320 0.59 +0.3
1,059 + 15688 mRNA_7320 0.67 +0.1
1,167 + 15688 mRNA_7320 0.74 +2.8
1,174 + 15688 mRNA_7320 0.75 +1.3
1,182 - 15688 mRNA_7320 0.75 +0.8
1,196 + 15688 mRNA_7320 0.76 -0.0
1,218 + 15688 mRNA_7320 0.78 -0.9
1,258 + 15688 mRNA_7320 0.81 -0.5
1,326 - 15688 mRNA_7320 0.85 -0.1
1,360 + 15688 mRNA_7320 0.88 -0.2
1,366 + 15688 mRNA_7320 0.88 -0.1
1,497 - +0.6
1,518 + -0.1
1,582 + -0.2
1,666 - +1.8
1,675 + +0.8
1,789 - +0.5
1,907 + +0.5
1,929 + +1.9
1,948 + +1.1
2,105 - +0.8
2,297 - 15689 mRNA_7321 0.19 +0.1
2,508 - 15689 mRNA_7321 0.31 +1.5
2,521 + 15689 mRNA_7321 0.32 -0.1
2,526 + 15689 mRNA_7321 0.32 +1.5
2,529 - 15689 mRNA_7321 0.32 +1.2
2,529 - 15689 mRNA_7321 0.32 +0.1

Or see this region's nucleotide sequence