Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7358

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15725 and 15726 are separated by 452 nucleotides15726 and 15727 are separated by 170 nucleotides mRNA_7357: 15725 - Hypothetical Protein, at 82,234 to 84,306 15725 mRNA_7358: 15726 - Hypothetical Protein, at 84,759 to 87,914 15726 mRNA_7359: 15727 - KOG3130 Uncharacterized conserved protein, at 88,085 to 88,999 15727

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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83,878 + 15725 mRNA_7357 0.79 +0.3
84,034 + 15725 mRNA_7357 0.87 -1.2
84,034 + 15725 mRNA_7357 0.87 +0.8
84,039 + 15725 mRNA_7357 0.87 -0.4
84,135 - +1.1
84,282 + -0.6
84,445 - -1.1
84,460 - +1.4
84,467 + -0.4
84,853 + -0.4
84,856 - +0.2
88,420 - 15727 mRNA_7359 0.37 +1.0
88,431 + 15727 mRNA_7359 0.38 +1.7
88,455 - 15727 mRNA_7359 0.40 +0.5
88,860 - 15727 mRNA_7359 0.85 -0.2
88,876 + 15727 mRNA_7359 0.86 +1.9

Or see this region's nucleotide sequence