Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7446

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15813 and 15814 are separated by 590 nucleotides15814 and 15815 are separated by 365 nucleotides mRNA_7445: 15813 - Hypothetical Protein, at 294,010 to 294,708 15813 mRNA_7446: 15814 - K14085 ALDH7A1 aldehyde dehydrogenase family 7 member A1, at 295,299 to 297,030 15814 mRNA_7447: 15815 - HMMPfam-Uncharacterized protein conserved in bacteria (DUF2236)-PF09995, at 297,396 to 299,306 15815

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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294,426 - 15813 mRNA_7445 0.60 +0.0
294,556 - 15813 mRNA_7445 0.78 +1.9
294,578 + 15813 mRNA_7445 0.81 -0.1
294,603 - 15813 mRNA_7445 0.85 +0.5
294,606 - 15813 mRNA_7445 0.85 +1.4
294,632 + 15813 mRNA_7445 0.89 +1.5
294,726 - -0.6
294,743 + +1.9
294,745 + +0.3
294,885 - +2.4
294,886 - -0.3
294,890 - -0.4
294,891 - -1.5
294,892 - +1.1
294,892 + -2.6
294,892 - +1.4
294,893 + +0.6
294,898 - +0.4
294,900 + +1.3
294,901 - +0.1
294,902 - +0.9
294,905 + -0.7
294,906 - +0.2
294,916 - -0.0
294,922 + -0.7
294,927 - +0.9
294,928 - -0.4
294,933 + -0.2
294,935 + -1.7
294,955 + -2.9
294,959 + +1.0
294,969 + -1.9
294,969 - +0.5
294,983 + +1.0
294,985 - +0.4
295,189 - +0.3
295,238 - -0.2
295,257 + -0.0
295,260 + +0.8
295,266 + +0.1
295,275 + +0.9
295,371 + -0.6
295,399 - +0.4
295,414 + +1.2
295,422 - +2.2
295,693 + 15814 mRNA_7446 0.23 -0.1
295,890 + 15814 mRNA_7446 0.34 +2.0
296,495 - 15814 mRNA_7446 0.69 +1.0
296,887 + -0.6
297,014 + +0.4
297,019 + -0.4
297,039 - +0.7
297,163 - +0.7
297,320 - +0.2
297,338 + -0.6
297,342 + -1.0
297,349 + -1.7
297,356 + +2.6
297,357 + +0.3
297,473 + -1.3
297,491 + -0.1
297,510 + +0.6
297,765 + 15815 mRNA_7447 0.19 +0.9

Or see this region's nucleotide sequence