Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7461

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15828 and 15829 are separated by 484 nucleotides15829 and 15830 are separated by 343 nucleotides mRNA_7460: 15828 - K00698 CHS1 chitin synthase, at 327,508 to 332,421 15828 mRNA_7461: 15829 - K08964 mtnB methylthioribulose-1-phosphate dehydratase, at 332,906 to 334,515 15829 mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334,859 to 336,377 15830

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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332,378 - -1.4
332,399 - -1.1
332,435 + -2.7
332,538 - +0.6
332,541 - -0.1
332,548 + +0.2
332,565 + +0.7
332,679 - +1.0
332,681 - +0.0
332,682 - +0.6
332,684 + +1.1
332,694 + +0.7
332,707 - +0.4
332,713 - +2.0
332,801 - -0.4
332,824 - +0.6
332,844 + -0.3
332,852 + +0.5
332,862 + -0.1
332,866 + -0.1
332,867 + -0.3
332,881 + +1.4
333,023 - -0.9
333,287 - 15829 mRNA_7461 0.24 +0.5
333,309 + 15829 mRNA_7461 0.25 +0.7
333,442 - 15829 mRNA_7461 0.33 +0.7
333,692 - 15829 mRNA_7461 0.49 +0.6
334,195 - 15829 mRNA_7461 0.80 -0.0
334,323 - 15829 mRNA_7461 0.88 +1.5
334,501 - -0.9
334,605 + -0.4
334,605 + -1.4
334,608 + -0.9
334,624 + +1.5
334,758 - +0.3
334,765 + -0.1
334,771 - +1.0
335,364 + 15830 mRNA_7462 0.33 +0.3
335,382 + 15830 mRNA_7462 0.34 -0.1
335,503 - 15830 mRNA_7462 0.42 +0.0
335,504 + 15830 mRNA_7462 0.42 +0.2
335,509 + 15830 mRNA_7462 0.43 +0.4

Or see this region's nucleotide sequence