Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7538

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15905 and 15906 are separated by 279 nucleotides mRNA_7537: 15905 - K13524 ABAT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 514,808 to 517,082 15905 mRNA_7538: 15906 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 517,362 to 518,534 15906

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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516,412 - 15905 mRNA_7537 0.71 +0.2
516,420 + 15905 mRNA_7537 0.71 -0.4
517,385 - +0.1
518,628 - +0.3
518,658 - -1.2
518,667 + -2.5
518,756 + +1.1
518,900 + +0.4
518,937 + +0.7
518,947 + +0.3
518,959 - -0.2
518,977 + -0.4
519,067 + +0.2
519,115 + -0.3
519,121 - -0.3
519,125 + -0.5
519,142 + +0.3
519,146 - +0.3
519,157 + -2.5
519,162 + +0.5
519,189 - -1.3
519,199 - +1.0
519,226 - -0.1
519,244 - +0.7
519,265 + +0.2
519,373 - -0.2
519,386 - -0.2
519,515 - +0.4
519,530 - +0.2

Or see this region's nucleotide sequence