Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7583

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15950 and 15951 are separated by 61 nucleotides15951 and 15952 are separated by 294 nucleotides mRNA_7582: 15950 - KOG2534 DNA polymerase IV (family X), at 614,883 to 616,136 15950 mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616,198 to 617,544 15951 mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617,839 to 618,826 15952

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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615,295 + 15950 mRNA_7582 0.33 +0.4
615,725 + 15950 mRNA_7582 0.67 +0.5
615,748 + 15950 mRNA_7582 0.69 +1.5
615,758 - 15950 mRNA_7582 0.70 +0.2
615,765 + 15950 mRNA_7582 0.70 +0.8
615,768 - 15950 mRNA_7582 0.71 +0.2
615,775 + 15950 mRNA_7582 0.71 +1.6
616,046 - +1.2
616,199 + +0.4
617,080 + 15951 mRNA_7583 0.65 +0.0
617,214 + 15951 mRNA_7583 0.75 +3.8
617,251 - 15951 mRNA_7583 0.78 +0.5
617,349 + 15951 mRNA_7583 0.85 -2.1
617,364 - 15951 mRNA_7583 0.87 +1.0
617,484 + +0.0
617,622 + -1.4
617,633 - -0.5
617,686 + -0.1
617,794 + -0.1
617,833 + +0.5
618,089 - 15952 mRNA_7584 0.25 -0.1
618,239 - 15952 mRNA_7584 0.40 -3.2

Or see this region's nucleotide sequence