Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7695

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16062 and 16063 are separated by 658 nucleotides mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272 16062 mRNA_7695: 16063 - HMMPfam-Domain of unknown function (DUF1992)-PF09350, at 855,931 to 857,738 16063

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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855,455 - +0.5
855,592 - -2.4
855,621 - +0.3
855,624 + +1.1
855,627 + +0.7
855,629 + -0.1
855,629 - +0.6
855,632 + -1.6
855,740 - +0.5
855,769 + +0.3
855,775 + -0.0
856,266 + 16063 mRNA_7695 0.19 -0.1
856,406 + 16063 mRNA_7695 0.26 +1.0
856,515 + 16063 mRNA_7695 0.32 +0.9
856,784 + 16063 mRNA_7695 0.47 +0.4
856,787 + 16063 mRNA_7695 0.47 +1.0
857,191 + 16063 mRNA_7695 0.70 -0.3
857,221 - 16063 mRNA_7695 0.71 +0.6
857,793 + -0.0
857,931 + -0.9
857,943 - -1.2
857,961 - -0.0
857,963 - -1.2
858,060 - -0.3
858,071 - -4.6
858,073 + +0.1
858,074 - +1.5
858,082 - -0.6
858,529 + -1.3
858,667 - -0.4

Or see this region's nucleotide sequence