Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7700

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16068 and 16069 are separated by 602 nucleotides mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874,959 to 876,595 16068 mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877,198 to 880,311 16069

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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874,543 - +1.1
874,588 - +1.3
874,656 + +0.5
875,064 - +1.6
875,067 - -0.4
875,349 - 16068 mRNA_7700 0.24 +0.6
875,447 - 16068 mRNA_7700 0.30 +0.5
875,471 + 16068 mRNA_7700 0.31 +0.9
875,645 - 16068 mRNA_7700 0.42 +0.2
875,757 - 16068 mRNA_7700 0.49 -1.5
875,757 - 16068 mRNA_7700 0.49 +0.7
875,901 - 16068 mRNA_7700 0.58 +0.8
875,917 + 16068 mRNA_7700 0.59 +0.8
876,064 - 16068 mRNA_7700 0.68 +0.3
876,225 + 16068 mRNA_7700 0.77 +0.3
876,339 + 16068 mRNA_7700 0.84 +1.0
876,481 - +0.8
876,495 + +0.5
876,517 + +0.6
876,524 - +0.7
876,564 - +0.5
876,641 - -0.2
876,661 + -1.1
876,669 + +0.8
876,761 - +0.0
876,809 - +0.5
876,823 + +0.1
876,824 + -0.3
876,839 + -0.8
876,839 + -1.5
876,940 + -0.9
876,942 - +1.1
876,946 - +0.2
876,946 - +0.4
876,948 - +0.5
876,950 - +0.6
876,950 - +0.8
876,951 + +1.9
876,960 - -0.5
876,961 - +0.8
876,994 - +1.6
877,009 + +0.3
877,020 + -0.2
877,035 + +0.4
877,099 + +0.8
877,113 - +1.1
877,121 + -2.1
877,137 + +2.1
877,145 - +0.3
877,151 - -0.5
877,152 + -0.2
877,173 + +0.1
877,249 - +0.9
877,259 + -0.0
877,319 + +1.0
877,379 - +1.8
877,401 + +0.9
877,409 + +0.6
877,415 - +2.7
877,546 + 16069 mRNA_7701 0.11 +0.8

Or see this region's nucleotide sequence