Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7831

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16198 and 16199 are separated by 372 nucleotides16199 and 16200 are separated by 151 nucleotides mRNA_7830: 16198 - Hypothetical Protein, at 1,164,524 to 1,165,220 16198 mRNA_7831: 16199 - Hypothetical Protein, at 1,165,593 to 1,166,209 16199 mRNA_7832: 16200 - K14843 PES1, NOP7 pescadillo, at 1,166,361 to 1,168,538 16200

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,164,726 - 16198 mRNA_7830 0.29 +0.4
1,164,791 - 16198 mRNA_7830 0.38 -0.0
1,164,873 - 16198 mRNA_7830 0.50 +2.6
1,164,896 - 16198 mRNA_7830 0.53 -2.2
1,164,912 + 16198 mRNA_7830 0.56 +0.9
1,165,174 + +0.2
1,165,192 - +0.4
1,165,303 + -0.2
1,165,671 - 16199 mRNA_7831 0.13 +0.5
1,165,928 - 16199 mRNA_7831 0.54 -0.2
1,166,084 - 16199 mRNA_7831 0.80 +0.8
1,166,228 + +0.6
1,166,262 - +0.0
1,166,357 - +1.1

Or see this region's nucleotide sequence