Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7906

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16273 and 16274 are separated by 797 nucleotides16274 and 16275 are separated by 127 nucleotides mRNA_7905: 16273 - K00147 proA glutamate-5-semialdehyde dehydrogenase, at 1,344,206 to 1,345,846 16273 mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770 16274 mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1,348,898 to 1,356,379 16275

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,345,846 + +0.7
1,345,851 + +0.0
1,345,851 - -1.5
1,345,864 - -0.3
1,345,882 + +0.8
1,345,887 - +0.8
1,345,907 - +0.4
1,345,923 + +1.1
1,345,982 - +0.5
1,345,984 - -1.4
1,345,995 - +0.3
1,346,003 + -1.3
1,346,019 + +1.0
1,346,022 + +0.2
1,346,089 - -2.1
1,346,146 + -0.2
1,346,162 + +0.5
1,346,188 + -0.1
1,346,266 - +0.5
1,346,281 - -0.6
1,346,282 - +0.3
1,346,301 + +0.3
1,346,302 + +1.2
1,346,323 - -0.9
1,346,335 + +0.3
1,346,360 - -0.1
1,346,379 - +0.7
1,346,400 + +0.4
1,346,410 + +0.6
1,346,460 - +1.0
1,346,596 + +0.5
1,346,597 - -0.2
1,346,601 + -0.8
1,346,608 + -0.3
1,346,612 - +0.6
1,346,762 + -0.4
1,346,775 + +0.4
1,346,865 - 16274 mRNA_7906 0.10 +0.2
1,346,914 + 16274 mRNA_7906 0.13 +0.5
1,347,064 - 16274 mRNA_7906 0.20 +0.3
1,347,324 + 16274 mRNA_7906 0.32 +1.5
1,347,327 - 16274 mRNA_7906 0.32 +0.7
1,347,340 - 16274 mRNA_7906 0.33 +0.9
1,347,399 + 16274 mRNA_7906 0.35 +0.3
1,347,496 + 16274 mRNA_7906 0.40 +1.0
1,347,568 - 16274 mRNA_7906 0.43 +0.5
1,347,688 - 16274 mRNA_7906 0.49 -0.1
1,347,819 - 16274 mRNA_7906 0.55 +3.1
1,347,861 - 16274 mRNA_7906 0.57 +0.7
1,347,923 - 16274 mRNA_7906 0.60 +0.6
1,347,929 - 16274 mRNA_7906 0.60 +1.0
1,348,103 - 16274 mRNA_7906 0.69 -0.6
1,348,120 - 16274 mRNA_7906 0.69 +0.6
1,348,121 - 16274 mRNA_7906 0.69 +0.8
1,348,224 + 16274 mRNA_7906 0.74 +0.4
1,348,299 - 16274 mRNA_7906 0.78 -0.1
1,348,304 + 16274 mRNA_7906 0.78 +1.6
1,348,433 + 16274 mRNA_7906 0.84 +0.5
1,348,706 - +0.5
1,348,720 + -0.2
1,348,760 - -1.4

Or see this region's nucleotide sequence