Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7928

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16295 and 16296 are separated by 291 nucleotides16296 and 16297 are separated by 111 nucleotides mRNA_7927: 16295 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 38,258 to 39,116 16295 mRNA_7928: 16296 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 39,408 to 40,571 16296 mRNA_7929: 16297 - K02013 ABC.FEV.A iron complex transport system ATP-binding protein, at 40,683 to 43,204 16297

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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38,556 + 16295 mRNA_7927 0.35 -0.0
38,665 + 16295 mRNA_7927 0.47 -0.3
38,726 - 16295 mRNA_7927 0.54 -0.4
38,735 - 16295 mRNA_7927 0.56 +1.3
38,741 + 16295 mRNA_7927 0.56 -1.2
38,743 + 16295 mRNA_7927 0.56 -2.5
38,820 + 16295 mRNA_7927 0.65 -0.3
38,822 - 16295 mRNA_7927 0.66 -0.3
38,840 + 16295 mRNA_7927 0.68 +0.2
38,842 + 16295 mRNA_7927 0.68 +0.9
38,991 + 16295 mRNA_7927 0.85 -0.8
39,009 - 16295 mRNA_7927 0.87 +0.8
39,022 + 16295 mRNA_7927 0.89 +1.7
39,057 + -0.1
39,131 + +0.1
39,165 + -0.1
39,177 - +1.5
39,264 - +1.1
39,302 - +1.1
39,317 + -1.6
39,338 + +1.0
39,479 - +0.5
39,639 - 16296 mRNA_7928 0.20 +1.4
39,643 - 16296 mRNA_7928 0.20 +0.7
39,665 + 16296 mRNA_7928 0.22 -0.2
39,721 - 16296 mRNA_7928 0.27 -1.9
39,732 - 16296 mRNA_7928 0.28 +0.4
39,791 + 16296 mRNA_7928 0.33 +1.1
39,807 - 16296 mRNA_7928 0.34 +0.1
39,890 + 16296 mRNA_7928 0.41 +0.1
39,893 - 16296 mRNA_7928 0.42 +1.6
39,893 - 16296 mRNA_7928 0.42 +0.6
39,893 - 16296 mRNA_7928 0.42 +1.0
39,957 + 16296 mRNA_7928 0.47 +2.0
39,992 - 16296 mRNA_7928 0.50 +1.0
40,077 + 16296 mRNA_7928 0.57 +0.3
40,129 + 16296 mRNA_7928 0.62 -0.0
40,146 + 16296 mRNA_7928 0.63 +0.6
40,315 + 16296 mRNA_7928 0.78 -0.6
40,323 - 16296 mRNA_7928 0.79 +0.9
40,359 - 16296 mRNA_7928 0.82 +0.2
40,400 - 16296 mRNA_7928 0.85 -0.9
40,417 + 16296 mRNA_7928 0.87 -0.3
40,475 + +1.1
40,511 + -1.3
40,678 - +0.8
40,707 + -0.3
40,810 - +0.7
40,839 + +0.4
40,981 + 16297 mRNA_7929 0.12 -1.2
40,984 - 16297 mRNA_7929 0.12 -0.0
40,985 + 16297 mRNA_7929 0.12 -1.2
41,215 - 16297 mRNA_7929 0.21 -0.1
41,234 - 16297 mRNA_7929 0.22 +1.1
41,240 + 16297 mRNA_7929 0.22 +0.1
41,243 - 16297 mRNA_7929 0.22 -0.1
41,243 - 16297 mRNA_7929 0.22 +2.1
41,267 - 16297 mRNA_7929 0.23 +0.9
41,299 + 16297 mRNA_7929 0.24 -0.2
41,354 + 16297 mRNA_7929 0.27 +2.1
41,355 - 16297 mRNA_7929 0.27 +2.5
41,370 + 16297 mRNA_7929 0.27 -0.0
41,486 - 16297 mRNA_7929 0.32 +0.4
41,514 - 16297 mRNA_7929 0.33 +1.3

Or see this region's nucleotide sequence