Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7930

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16297 and 16298 are separated by 447 nucleotides mRNA_7929: 16297 - K02013 ABC.FEV.A iron complex transport system ATP-binding protein, at 40,683 to 43,204 16297 mRNA_7930: 16298 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 43,652 to 44,554 16298

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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42,704 + 16297 mRNA_7929 0.80 -0.7
42,819 - 16297 mRNA_7929 0.85 +0.5
42,827 - 16297 mRNA_7929 0.85 -0.3
42,849 + 16297 mRNA_7929 0.86 -1.2
42,849 + 16297 mRNA_7929 0.86 +1.7
42,863 + 16297 mRNA_7929 0.86 -0.2
43,150 + +0.5
43,229 - +1.0
43,286 + -1.2
43,306 - +0.9
43,447 - +2.6
43,568 - +0.2
43,588 + -0.2
43,588 + -0.1
43,589 - +0.2
43,744 + 16298 mRNA_7930 0.10 +2.4
43,812 - 16298 mRNA_7930 0.18 +0.1
43,823 + 16298 mRNA_7930 0.19 +1.7
44,011 + 16298 mRNA_7930 0.40 +0.6
44,018 + 16298 mRNA_7930 0.41 +0.2
44,022 - 16298 mRNA_7930 0.41 +0.4
44,038 + 16298 mRNA_7930 0.43 -1.0
44,116 + 16298 mRNA_7930 0.51 +0.3
44,171 - 16298 mRNA_7930 0.57 +0.9
44,181 + 16298 mRNA_7930 0.59 +1.3
44,187 - 16298 mRNA_7930 0.59 +0.3
44,311 + 16298 mRNA_7930 0.73 +2.3
44,580 + -0.2
44,589 + -0.6
44,615 - +1.0
44,618 + +1.7
44,667 - +0.3
44,738 + -0.3
44,740 - -0.4
44,788 + +0.8
45,144 + +1.3
45,189 - +1.0
45,212 + -0.4
45,379 + -0.0
45,389 - +0.9
45,477 + +1.9
45,479 + +2.4

Or see this region's nucleotide sequence