Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7997

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16364 and 16365 are separated by 274 nucleotides16365 and 16366 are separated by 344 nucleotides mRNA_7996: 16364 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 174,133 to 175,085 16364 mRNA_7997: 16365 - Hypothetical Protein, at 175,360 to 176,282 16365 mRNA_7998: 16366 - KOG3156 Uncharacterized membrane protein, at 176,627 to 177,709 16366

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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174,502 + 16364 mRNA_7996 0.39 -0.8
174,528 + 16364 mRNA_7996 0.41 +1.7
174,584 + 16364 mRNA_7996 0.47 +0.2
174,675 - 16364 mRNA_7996 0.57 +0.5
174,982 + 16364 mRNA_7996 0.89 +2.5
174,989 + 16364 mRNA_7996 0.90 +0.2
175,030 + +0.3
175,118 - +0.7
175,122 - +1.1
175,130 + +0.5
175,136 - -0.4
175,424 - +0.9
175,584 - 16365 mRNA_7997 0.24 +3.0
175,597 + 16365 mRNA_7997 0.26 +0.7
175,688 + 16365 mRNA_7997 0.36 -1.2
175,696 + 16365 mRNA_7997 0.36 -1.1
175,696 + 16365 mRNA_7997 0.36 -2.9
175,865 - 16365 mRNA_7997 0.55 +0.0
176,074 - 16365 mRNA_7997 0.77 -0.2
176,170 + 16365 mRNA_7997 0.88 +0.0
176,223 + -0.9
176,312 - +0.3
176,903 + 16366 mRNA_7998 0.25 -0.4

Or see this region's nucleotide sequence