Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8018

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16385 and 16386 are separated by 911 nucleotides mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385 mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008 16386

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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220,018 - +0.9
220,029 - +0.1
220,032 - +0.1
220,035 - -0.4
220,043 + +2.4
220,045 + +0.8
220,060 + +0.3
220,638 + 16386 mRNA_8018 0.37 +0.3
220,725 - 16386 mRNA_8018 0.52 +0.8
220,870 + 16386 mRNA_8018 0.76 +0.1
220,912 - 16386 mRNA_8018 0.84 +2.1
221,023 + +0.3
221,023 + -0.3
221,165 + +2.3
221,321 + +0.2
221,330 - +1.3
221,587 - -1.2
221,717 - +0.4
221,785 - +0.8

Or see this region's nucleotide sequence