Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8151

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16518 and 16519 are separated by 432 nucleotides16519 and 16520 are separated by 152 nucleotides mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165 16518 mRNA_8151: 16519 - K19846 SPA2 protein SPA2, at 532,598 to 536,503 16519 mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536,656 to 537,504 16520

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
532,258 - +2.2
532,388 - +0.3
532,392 - +0.5
532,393 + -0.7
532,399 + -0.2
532,407 + +1.3
532,493 - +0.6
532,532 + +0.2
532,536 + +0.3
532,538 - +0.3
532,538 + -0.4
532,543 + -1.4
532,544 - +1.2
532,592 - +4.0
532,680 + +0.6
532,682 - +1.0
532,687 - -0.0
532,696 + +3.0
532,696 + +0.8
532,825 + +1.3
532,836 + +1.6
532,844 - +0.6
532,853 + +0.5
533,110 - 16519 mRNA_8151 0.13 -0.7
533,181 - 16519 mRNA_8151 0.15 +1.0
533,271 + 16519 mRNA_8151 0.17 +0.9
533,392 - 16519 mRNA_8151 0.20 -0.1
533,404 + 16519 mRNA_8151 0.21 +0.7
533,572 - 16519 mRNA_8151 0.25 +1.3
533,580 + 16519 mRNA_8151 0.25 +2.0
534,100 + 16519 mRNA_8151 0.38 +1.5
534,143 + 16519 mRNA_8151 0.40 +1.8
534,479 - 16519 mRNA_8151 0.48 +1.4
534,542 + 16519 mRNA_8151 0.50 +2.9
534,558 - 16519 mRNA_8151 0.50 +0.4
534,580 + 16519 mRNA_8151 0.51 +1.0
534,631 - 16519 mRNA_8151 0.52 +0.9
535,322 - 16519 mRNA_8151 0.70 +0.2
535,452 - 16519 mRNA_8151 0.73 +3.3
535,731 + 16519 mRNA_8151 0.80 +1.5
535,892 - 16519 mRNA_8151 0.84 +0.9
535,999 - 16519 mRNA_8151 0.87 +0.6
536,164 + -1.2
536,750 + 16520 mRNA_8152 0.11 +0.0
537,125 - 16520 mRNA_8152 0.55 +0.2
537,241 - 16520 mRNA_8152 0.69 +1.4
537,333 - 16520 mRNA_8152 0.80 -2.1
537,361 - 16520 mRNA_8152 0.83 +0.1
537,465 - -1.6
537,470 - +1.4

Or see this region's nucleotide sequence