Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8169

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16536 and 16537 are separated by 839 nucleotides16537 and 16538 are separated by 899 nucleotides mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600 16536 mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866 16537 mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530 16538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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581,481 - -0.4
581,656 - +1.0
581,661 - -0.0
581,779 + -0.7
581,788 + -1.2
581,874 - +1.6
581,914 - +1.6
581,927 + +0.8
581,935 + +0.5
581,946 + +1.5
582,060 - +1.6
582,067 + -1.3
582,073 + +0.9
582,222 + +2.2
582,243 - +1.3
582,252 - +1.4
582,353 + -0.3
582,354 - -0.1
582,389 + +0.8
583,388 - 16537 mRNA_8169 0.39 +1.7
583,773 + 16537 mRNA_8169 0.55 -1.3
585,562 + +0.2

Or see this region's nucleotide sequence