Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8254

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16621 and 16622 are separated by 383 nucleotides16622 and 16623 are separated by 353 nucleotides mRNA_8253: 16621 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 774,552 to 775,844 16621 mRNA_8254: 16622 - HMMPfam-Stc1 domain-PF12898, at 776,228 to 777,333 16622 mRNA_8255: 16623 - K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase, at 777,687 to 778,914 16623

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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775,340 + 16621 mRNA_8253 0.61 +0.8
775,470 - 16621 mRNA_8253 0.71 -1.4
775,474 + 16621 mRNA_8253 0.71 +0.2
775,606 + 16621 mRNA_8253 0.82 +0.4
775,906 - +1.0
775,923 + -0.2
775,938 + -0.5
776,030 + -0.6
776,087 - -2.3
776,092 + -1.6
776,226 + +1.1
776,625 - 16622 mRNA_8254 0.36 +0.1
776,801 + 16622 mRNA_8254 0.52 -0.0
777,072 + 16622 mRNA_8254 0.76 +0.3
777,189 + 16622 mRNA_8254 0.87 +0.0
777,630 + +1.4

Or see this region's nucleotide sequence