Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8309

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16676 and 16677 are separated by 107 nucleotides16677 and 16678 are separated by 426 nucleotides mRNA_8308: 16676 - ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 899,547 to 900,613 16676 mRNA_8309: 16677 - K06965 PELO, DOM34, pelA protein pelota, at 900,721 to 902,755 16677 mRNA_8310: 16678 - K18752 TNPO1, IPO2, KPNB2 transportin-1, at 903,182 to 906,312 16678

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
899,812 + 16676 mRNA_8308 0.25 +1.2
899,887 - 16676 mRNA_8308 0.32 +1.7
900,053 - 16676 mRNA_8308 0.47 +2.0
900,061 + 16676 mRNA_8308 0.48 -0.5
900,062 - 16676 mRNA_8308 0.48 +0.2
900,197 - 16676 mRNA_8308 0.61 +0.2
900,335 - 16676 mRNA_8308 0.74 -0.6
900,340 + 16676 mRNA_8308 0.74 -0.7
900,489 + 16676 mRNA_8308 0.88 +1.4
902,826 - +2.7
902,959 - -0.1
902,961 + +0.8
902,965 + -0.3
902,967 + -2.1
902,984 + +0.4

Or see this region's nucleotide sequence