Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8351

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16718 and 16719 are separated by 117 nucleotides16719 and 16720 are separated by 967 nucleotides mRNA_8350: 16718 - K11397 EAF1, VID21 chromatin modification-related protein VID21, at 1,003,581 to 1,006,700 16718 mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1,006,818 to 1,012,012 16719 mRNA_8352: 16720 - Hypothetical Protein, at 1,012,980 to 1,013,679 16720

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,005,949 + 16718 mRNA_8350 0.76 -3.8
1,006,501 - +0.2
1,006,963 - -0.0
1,007,264 - +0.6
1,009,044 + 16719 mRNA_8351 0.43 +0.3
1,011,993 + -0.1
1,011,998 - -0.2
1,012,004 + +0.5
1,012,274 + +1.0
1,012,614 - +0.1
1,012,872 - +0.2
1,012,893 - +1.4

Or see this region's nucleotide sequence