Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8381

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16748 and 16749 are separated by 214 nucleotides16749 and 16750 are separated by 278 nucleotides mRNA_8380: 16748 - KOG4197 FOG PPR repeat, at 1,073,691 to 1,078,543 16748 mRNA_8381: 16749 - Hypothetical Protein, at 1,078,758 to 1,080,099 16749 mRNA_8382: 16750 - K00799 GST, gst glutathione S-transferase, at 1,080,378 to 1,081,397 16750

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,078,651 + +1.2
1,078,759 + +1.6
1,078,849 - +0.5
1,079,366 - 16749 mRNA_8381 0.45 +0.3
1,079,543 - 16749 mRNA_8381 0.58 +0.1
1,079,579 - 16749 mRNA_8381 0.61 +0.1
1,079,701 + 16749 mRNA_8381 0.70 -0.4
1,079,836 - 16749 mRNA_8381 0.80 +0.7
1,080,006 - +0.2
1,080,168 - -0.5
1,080,260 - +1.0
1,080,264 - -0.2
1,080,288 - -1.0
1,080,294 - -0.4
1,080,307 - -0.1
1,080,486 - 16750 mRNA_8382 0.11 -0.2
1,080,488 + 16750 mRNA_8382 0.11 -0.4
1,080,601 + 16750 mRNA_8382 0.22 +0.6
1,080,776 + 16750 mRNA_8382 0.39 +0.4
1,080,992 - 16750 mRNA_8382 0.60 +0.5
1,081,047 + 16750 mRNA_8382 0.66 +0.5

Or see this region's nucleotide sequence