Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8487

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16855 and 16856 are separated by 328 nucleotides mRNA_8487: 16855 - Hypothetical Protein, at 1,342,894 to 1,343,446 16855 mRNA_8488: 16856 - K03135 TAF11 transcription initiation factor TFIID subunit 11, at 1,343,775 to 1,344,763 16856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,341,903 - -2.7
1,341,903 - -0.2
1,341,907 - -1.1
1,341,910 + -0.1
1,341,910 + +0.9
1,341,910 + +0.7
1,341,910 + +1.0
1,341,910 + -0.1
1,342,005 - +0.3
1,342,072 - -0.2
1,342,124 + +0.5
1,342,124 + -0.5
1,342,124 - +0.8
1,342,175 - -0.2
1,342,179 + +0.2
1,342,233 + +0.3
1,342,249 + +0.7
1,342,364 - +3.1
1,342,513 - +0.3
1,342,890 - +0.5
1,342,938 + +1.6
1,342,966 + 16855 mRNA_8487 0.13 -1.8
1,343,557 - +1.3
1,343,633 - +0.9
1,343,643 + +0.1

Or see this region's nucleotide sequence