Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_73

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8441 and 8442 are separated by 274 nucleotides mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169,827 to 173,814 8441 mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174,089 to 180,350 8442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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168,846 + +0.4
168,861 - -0.5
168,864 - -0.1
168,906 + +0.5
168,935 - -0.3
169,155 - +0.4
169,182 - -0.4
169,202 + +0.9
169,356 + +1.5
169,358 - -1.2
169,648 - -0.1
169,668 - +0.7
169,790 - -0.0
169,840 + +0.5
170,219 + +1.2
170,253 - 8441 mRNA_73 0.11 +2.3
170,901 - 8441 mRNA_73 0.27 +0.3
171,079 + 8441 mRNA_73 0.31 +1.9
171,383 - 8441 mRNA_73 0.39 -0.4
171,551 - 8441 mRNA_73 0.43 -0.1
172,023 - 8441 mRNA_73 0.55 -0.0
172,280 - 8441 mRNA_73 0.62 +1.6
172,438 - 8441 mRNA_73 0.65 +0.4
172,739 + 8441 mRNA_73 0.73 +0.4
172,751 - 8441 mRNA_73 0.73 +1.1
172,813 - 8441 mRNA_73 0.75 +0.8
172,962 + 8441 mRNA_73 0.79 -0.6
173,174 - 8441 mRNA_73 0.84 +0.4
173,424 - +1.7
173,424 + +0.4
173,518 - +1.3
173,553 - +2.2
173,837 + +2.4
173,862 + +0.7
174,086 - +0.2
174,096 - +0.3
174,298 + -0.3
174,298 + +0.2
174,532 + +1.4
174,678 + +0.4

Or see this region's nucleotide sequence