Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_116

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8483 and 8484 are separated by 305 nucleotides8484 and 8485 are separated by 555 nucleotides mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270,395 to 274,744 8483 mRNA_116: 8484 - K06072 DOHH deoxyhypusine monooxygenase, at 275,050 to 276,428 8484 mRNA_117: 8485 - K14815 MRT4 mRNA turnover protein 4, at 276,984 to 278,095 8485

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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274,657 + +2.5
274,803 + -1.1
274,820 + -0.9
274,822 + +0.6
274,824 - -0.3
274,833 - +0.7
274,839 + -0.6
274,847 - -0.3
274,847 - +2.4
274,848 - +0.8
274,873 + -1.1
274,960 - +0.4
275,004 - +0.2
276,615 + -0.5
276,747 - +0.3
276,907 - -0.4

Or see this region's nucleotide sequence