Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_136

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8503 and 8504 are separated by 774 nucleotides8504 and 8505 are separated by 528 nucleotides mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323,114 to 325,275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326,050 to 327,675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328,204 to 331,764 8505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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325,115 - +0.9
325,115 - -0.3
325,291 - +0.3
325,293 + +0.1
325,300 + +0.5
325,301 - +1.1
325,302 + +0.4
325,312 - +1.1
325,317 + -0.3
325,452 - +0.8
325,594 + +0.5
325,595 - +0.6
325,604 - +2.4
325,921 + +0.6
326,033 + -0.1
326,324 + 8504 mRNA_136 0.17 +0.6
326,384 - 8504 mRNA_136 0.21 +1.7
326,661 - 8504 mRNA_136 0.38 +0.5
326,837 + 8504 mRNA_136 0.48 +0.2
326,915 + 8504 mRNA_136 0.53 +0.7
326,937 + 8504 mRNA_136 0.55 +0.5
326,970 - 8504 mRNA_136 0.57 +1.1
326,997 + 8504 mRNA_136 0.58 -0.9
327,076 + 8504 mRNA_136 0.63 +2.1
327,240 - 8504 mRNA_136 0.73 +0.7
327,253 + 8504 mRNA_136 0.74 +0.5
327,259 + 8504 mRNA_136 0.74 -0.4
327,335 - 8504 mRNA_136 0.79 +0.3
327,359 - 8504 mRNA_136 0.81 +1.4
327,504 + 8504 mRNA_136 0.89 +0.1
327,565 - -1.2
327,648 + -0.4
327,652 - -0.3
327,662 - -0.1
327,663 + +0.8
327,667 + -1.0
327,669 - +1.1
327,686 + +1.3
327,819 - -0.9
327,980 + +0.2
328,075 - +2.5
328,101 - +1.4
328,107 - -0.7
328,112 + +1.1
328,261 - +0.1
328,275 + -0.3
328,280 + -0.0

Or see this region's nucleotide sequence