Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_221

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8588 and 8589 are separated by 482 nucleotides8589 and 8590 are separated by 215 nucleotides mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542,754 to 544,832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545,315 to 547,571 8589 mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547,787 to 548,767 8590

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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544,585 - 8588 mRNA_220 0.88 +1.0
544,586 + 8588 mRNA_220 0.88 +1.2
544,624 - 8588 mRNA_220 0.90 -0.3
544,746 - +1.5
545,045 - +1.0
545,046 - -0.7
545,060 - +0.3
545,071 - -0.8
545,079 + +1.8
545,081 + +0.6
545,082 - +0.1
545,106 + +0.4
545,134 - +0.3
545,182 - -0.2
545,225 - +0.0
545,225 + -0.1
545,231 - -0.7
545,240 + -0.7
545,257 + +0.1
545,380 - +0.7
545,381 + +0.6
545,668 + 8589 mRNA_221 0.16 -0.9
545,969 + 8589 mRNA_221 0.29 +0.5
546,125 - 8589 mRNA_221 0.36 +0.3
546,128 - 8589 mRNA_221 0.36 +0.5
546,133 - 8589 mRNA_221 0.36 +0.5
546,141 + 8589 mRNA_221 0.37 +1.2
546,421 - 8589 mRNA_221 0.49 -1.5
546,716 + 8589 mRNA_221 0.62 -0.5
546,729 + 8589 mRNA_221 0.63 +0.5
546,849 - 8589 mRNA_221 0.68 -0.0
547,318 - 8589 mRNA_221 0.89 +0.5
547,503 + +0.1
547,649 - +0.0

Or see this region's nucleotide sequence