Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_228

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8595 and 8596 are separated by 651 nucleotides8596 and 8597 are separated by 168 nucleotides mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561,039 to 562,506 8595 mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563,158 to 565,625 8596 mRNA_229: 8597 - Hypothetical Protein, at 565,794 to 566,303 8597

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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562,324 + 8595 mRNA_227 0.88 +0.6
562,325 + 8595 mRNA_227 0.88 +2.1
562,332 + 8595 mRNA_227 0.88 +0.1
562,431 + +1.2
562,463 + +1.1
562,604 - -0.6
562,624 + +0.8
562,625 - +0.2
562,626 + +1.4
562,631 + +0.1
562,766 - -0.2
562,915 - +0.4
562,915 + +1.4
562,925 - -1.4
562,926 - +2.1
562,926 + +1.7
562,934 + +0.7
562,939 + -0.4
562,967 + -0.0
563,006 - +0.7
563,007 + +1.0
563,008 - +0.5
563,024 + -0.3
563,025 - -0.2
563,025 + +1.0
563,030 - +0.3
563,034 - -0.5
563,047 + +0.2
563,048 + +1.0
563,055 + +0.7
563,068 - +0.4
563,071 + +0.9
563,072 - +0.5
563,074 + -0.1
563,085 - -0.4
563,087 + +1.0
563,087 + -2.4
563,099 - -1.2
563,114 + +0.4
563,190 + +0.3
563,203 - +1.0
563,206 + +0.3
563,207 + -0.8
563,211 - +0.4
563,213 - -0.1
563,213 + +0.2
563,218 + +1.6
563,222 + +0.9
563,226 - -0.1
563,227 + -0.6
563,260 - +0.7
563,361 - +0.7
563,362 + +0.2
563,515 + 8596 mRNA_228 0.14 +0.2
563,661 - 8596 mRNA_228 0.20 +0.3
564,269 + 8596 mRNA_228 0.45 +0.4
564,293 + 8596 mRNA_228 0.46 +0.9
564,518 - 8596 mRNA_228 0.55 -0.6
564,532 + 8596 mRNA_228 0.56 -0.4
565,076 - 8596 mRNA_228 0.78 -0.6
565,098 + 8596 mRNA_228 0.79 -0.6
565,242 + 8596 mRNA_228 0.84 -0.0
565,259 - 8596 mRNA_228 0.85 +0.9
565,392 + -0.3
565,827 - -0.4
565,838 - +1.0
566,143 - 8597 mRNA_229 0.68 +0.1
566,150 - 8597 mRNA_229 0.70 -0.9
566,579 - -0.3

Or see this region's nucleotide sequence