Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_261

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8628 and 8629 are separated by 19 nucleotides8629 and 8630 are separated by 264 nucleotides mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593 8628 mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433 8629 mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997 8630

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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626,704 + 8628 mRNA_260 0.47 +0.5
626,748 - 8628 mRNA_260 0.50 -0.7
626,888 - 8628 mRNA_260 0.58 +0.9
627,058 + 8628 mRNA_260 0.68 +0.3
627,061 + 8628 mRNA_260 0.68 +0.5
627,208 + 8628 mRNA_260 0.77 +0.2
627,215 - 8628 mRNA_260 0.77 +0.9
627,500 + +2.1
627,547 + -0.7
627,596 - +0.3
627,680 - -0.8
627,924 + 8629 mRNA_261 0.38 -0.4
628,067 + 8629 mRNA_261 0.55 +2.3
628,194 - 8629 mRNA_261 0.71 +0.4
628,201 + 8629 mRNA_261 0.72 +0.3
628,357 - +2.8
629,082 - -1.6
629,376 - -1.2
629,376 + -1.8
629,391 + +1.0
629,392 + -1.3

Or see this region's nucleotide sequence