Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_263

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8630 and 8631 are separated by 832 nucleotides mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997 8630 mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837 8631

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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629,082 - -1.6
629,376 - -1.2
629,376 + -1.8
629,391 + +1.0
629,392 + -1.3
629,530 - -0.1
629,823 - +0.6
629,856 + +0.4
629,940 - +0.7
630,088 + +1.5
633,324 + 8631 mRNA_263 0.70 +1.2
634,033 + 8631 mRNA_263 0.84 +0.2
634,048 - 8631 mRNA_263 0.84 +1.5
634,056 + 8631 mRNA_263 0.84 +0.5
634,160 - 8631 mRNA_263 0.86 +1.3
634,160 + 8631 mRNA_263 0.86 +2.9
634,165 - 8631 mRNA_263 0.87 +1.8
634,179 + 8631 mRNA_263 0.87 +1.7
634,182 + 8631 mRNA_263 0.87 +1.8
634,192 - 8631 mRNA_263 0.87 +1.7
634,264 - 8631 mRNA_263 0.89 +1.6
634,374 + +2.0
634,400 - +1.5
634,621 + +1.8
634,656 + +1.2
634,759 - +3.2
634,766 + +1.0
634,783 + +2.9
634,787 - +1.8
634,917 + +2.4
634,917 + +0.3
634,918 - +0.8
634,920 - +0.4
634,927 - +0.8
634,929 + +0.7
634,930 - -0.3
634,933 - +0.6
634,933 + +0.4
634,936 - -2.0
634,940 + +0.5
634,940 - +0.4
634,941 - +0.7
634,941 + +0.3
634,943 - +1.8
634,943 - +2.3
634,947 - +0.3
634,947 + +0.6
634,952 + -0.3
634,952 + -0.3
634,955 - +1.1
634,955 - +0.8
634,960 - +1.2
634,964 + +0.5
634,965 - +0.6
634,966 + +0.7
634,968 + +0.4
634,975 - +1.3
634,987 + +1.0
634,990 + +0.9
634,998 - +0.3
635,047 - -0.1
635,056 + +1.5
635,169 + +0.7
635,179 + +0.5
635,185 - +0.6
635,193 - +0.4
635,204 + +0.3
635,209 + +0.6
635,211 + +0.5
635,325 - +0.7
635,329 - +0.7
635,362 - +0.3
635,772 - +1.5

Or see this region's nucleotide sequence