Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_319

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8686 and 8687 are separated by 85 nucleotides8687 and 8688 are separated by 118 nucleotides mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757,594 to 759,249 8686 mRNA_319: 8687 - KOG2134 Polynucleotide kinase 3' phosphatase, at 759,335 to 760,537 8687 mRNA_320: 8688 - Hypothetical Protein, at 760,656 to 762,781 8688

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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758,983 - 8686 mRNA_318 0.84 -0.4
759,007 - 8686 mRNA_318 0.85 +1.3
759,128 + +0.9
759,281 - -1.1
759,283 - +0.5
759,294 + +0.3
759,424 + +0.4
759,424 - -0.2
759,446 + +0.8
759,591 - 8687 mRNA_319 0.21 +0.4
759,593 - 8687 mRNA_319 0.21 +0.1
759,596 + 8687 mRNA_319 0.22 +3.8
759,880 - 8687 mRNA_319 0.45 -0.1
760,182 - 8687 mRNA_319 0.70 -1.2
760,325 - 8687 mRNA_319 0.82 -0.1
760,329 - 8687 mRNA_319 0.83 +0.5
760,350 + 8687 mRNA_319 0.84 -0.1
760,450 + +0.8
760,611 - +0.5
760,639 - +1.0
760,752 - -1.3
760,753 - +2.4
760,753 + +0.2
760,753 - -0.1
760,755 + +0.2
760,756 + -1.4
761,027 - 8688 mRNA_320 0.17 +0.9
761,046 + 8688 mRNA_320 0.18 +1.6

Or see this region's nucleotide sequence