Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_325

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8692 and 8693 are separated by 306 nucleotides8693 and 8694 are separated by 209 nucleotides mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767,858 to 770,027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770,334 to 776,057 8693 mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776,267 to 777,781 8694

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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770,322 + +0.9
770,330 - +1.2
770,456 + +1.4
770,920 + 8693 mRNA_325 0.10 +0.2
771,183 - 8693 mRNA_325 0.15 +2.1
771,326 + 8693 mRNA_325 0.17 +1.4
771,331 + 8693 mRNA_325 0.17 -0.5
771,504 - 8693 mRNA_325 0.20 -0.5
771,842 - 8693 mRNA_325 0.26 -0.8
771,942 - 8693 mRNA_325 0.28 +0.0
772,411 - 8693 mRNA_325 0.36 -0.8
772,525 - 8693 mRNA_325 0.38 +0.5
772,538 + 8693 mRNA_325 0.39 +2.1
773,237 + 8693 mRNA_325 0.51 +0.8
773,516 + 8693 mRNA_325 0.56 +1.2
774,089 + 8693 mRNA_325 0.66 +0.4
774,267 + 8693 mRNA_325 0.69 +1.1
774,279 + 8693 mRNA_325 0.69 +0.4
774,693 + 8693 mRNA_325 0.76 +1.2
774,828 + 8693 mRNA_325 0.79 +0.5
774,932 + 8693 mRNA_325 0.80 +0.9
775,136 - 8693 mRNA_325 0.84 +0.5
775,261 - 8693 mRNA_325 0.86 +0.3
775,269 + 8693 mRNA_325 0.86 +1.9
775,425 + 8693 mRNA_325 0.89 +1.4
775,688 - +1.0
776,012 + -0.1
776,136 - +0.2
776,136 - +0.5
776,139 + -0.1
776,146 - +0.1
776,154 - +1.2
776,164 + +0.1
776,170 - -0.4
776,241 - +1.0
776,478 + 8694 mRNA_326 0.14 +0.2
777,052 + 8694 mRNA_326 0.52 -0.2

Or see this region's nucleotide sequence