Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_334

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8702 and 8703 are separated by 92 nucleotides mRNA_334: 8702 - K00938 E2.7.4.2, mvaK2 phosphomevalonate kinase, at 792,166 to 794,119 8702 mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794,212 to 794,991 8703

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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791,167 + +0.8
791,168 + +2.0
791,170 + +1.0
791,177 + +0.9
791,292 + +1.3
791,298 - +1.1
791,299 - +0.6
791,303 + +1.5
791,311 - +0.5
791,311 - +0.4
791,314 + -0.5
791,314 + -0.1
791,317 - -0.9
791,321 + +1.7
791,329 - +0.7
791,416 - +0.1
791,435 - +0.4
791,437 + +1.2
791,439 + -0.3
791,441 - +0.9
791,445 - +0.6
791,449 + +0.7
791,450 + +0.5
791,452 - +1.6
791,455 - +1.1
791,462 + +0.2
791,475 - +2.0
791,483 - -0.1
791,489 + +0.2
791,494 - +0.6
791,496 - +0.8
791,496 - -0.1
791,497 + -0.7
791,513 - +2.0
791,514 + +2.9
791,522 - -0.1
791,532 - -0.4
791,533 + -1.1
791,536 - +0.3
791,551 + -0.4
791,618 - +0.4
791,627 - -0.1
791,631 - +0.5
791,641 - +1.5
791,644 + +0.6
791,645 + -1.2
791,649 + +2.4
791,653 - +0.5
791,653 + +2.3
791,660 - +0.3
791,666 - +1.2
791,670 - +0.7
791,674 + -0.3
791,685 - +0.6
791,693 + +0.2
791,697 + +0.2
791,706 - +0.9
791,725 - +1.8
791,731 + -0.3
791,732 + -0.1
791,733 - -0.9
791,749 - -1.3
791,762 + -0.3
791,909 - +0.0
791,916 - +1.1
791,918 + -0.2
792,054 + -0.6
792,068 - -0.2
794,216 - +1.0
794,984 - +2.8
795,085 + +1.5
795,089 + +1.0
795,096 - +0.3
795,105 - +0.7

Or see this region's nucleotide sequence