Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_357

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8724 and 8725 are separated by 260 nucleotides8725 and 8726 are separated by 333 nucleotides mRNA_356: 8724 - K02727 PSMA3 20S proteasome subunit alpha 7, at 832,333 to 833,691 8724 mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833,952 to 835,830 8725 mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836,164 to 837,965 8726

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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833,804 - +1.0
833,808 - +1.4
833,810 - +0.6
833,813 - +1.1
833,826 - -1.7
833,829 + +0.4
833,830 - +0.3
833,832 - +1.1
833,836 - +2.2
833,838 + +0.6
833,844 - -0.4
833,853 + +1.4
833,991 + +1.9
834,028 - -2.6
834,448 + 8725 mRNA_357 0.26 +0.2
834,722 - 8725 mRNA_357 0.41 +1.4
834,730 + 8725 mRNA_357 0.41 +0.3
834,763 - 8725 mRNA_357 0.43 -0.6
835,177 - 8725 mRNA_357 0.65 +0.8
835,216 + 8725 mRNA_357 0.67 +0.1
835,343 - 8725 mRNA_357 0.74 -0.2
835,499 + 8725 mRNA_357 0.82 +1.3
835,724 - -0.1
835,750 - +2.1
835,759 - -1.8
835,762 - -0.3
835,899 - -0.4
835,901 + +2.2
835,915 + +0.3
835,918 - +0.3
836,049 - +0.3
836,052 + +0.2
836,059 + +0.2
836,070 - -0.1
836,194 + +1.0
836,466 + 8726 mRNA_358 0.17 +0.7

Or see this region's nucleotide sequence