Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_432

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8799 and 8800 are separated by 248 nucleotides8800 and 8801 are separated by 298 nucleotides mRNA_431: 8799 - HMMPfam-SH3-binding, glutamic acid-rich protein-PF04908,ProSiteProfiles-Glutaredoxin domain profile.-PS51354,SUPERFAMILY--SSF52833, at 1,000,743 to 1,002,192 8799 mRNA_432: 8800 - KOG4546 Peroxisomal biogenesis protein (peroxin 16), at 1,002,441 to 1,004,033 8800 mRNA_433: 8801 - K03247 EIF3H translation initiation factor 3 subunit H, at 1,004,332 to 1,006,168 8801

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,001,727 - 8799 mRNA_431 0.68 +0.5
1,002,160 + +1.1
1,002,160 - +0.4
1,002,171 + +1.0
1,002,173 - +0.7
1,002,370 + +1.1
1,003,501 - 8800 mRNA_432 0.67 -1.9
1,004,061 - -1.6
1,004,082 - -0.5
1,004,091 - +0.5
1,004,092 - -2.3
1,004,093 - +0.4
1,004,100 + +0.5
1,004,108 - +1.8
1,004,108 - +0.2
1,004,108 + -0.6
1,004,125 - +2.0
1,004,241 - +0.7
1,004,244 + +0.6
1,004,249 + +0.3
1,004,252 - +0.3
1,004,260 - +0.4
1,004,264 - +0.3

Or see this region's nucleotide sequence