Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_441

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8808 and 8809 are separated by 761 nucleotides8809 and 8810 are separated by 279 nucleotides mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1,020,213 to 1,022,062 8808 mRNA_441: 8809 - K13989 DERL2_3 Derlin-2/3, at 1,022,824 to 1,024,299 8809 mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1,024,579 to 1,029,147 8810

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,021,860 + 8808 mRNA_440 0.89 +1.5
1,022,103 - +0.3
1,022,128 + -0.7
1,022,131 + +1.6
1,022,142 + +2.3
1,022,268 - +0.1
1,022,274 - +0.8
1,022,287 - -0.1
1,022,297 - +1.2
1,022,335 + +0.4
1,022,336 + +0.8
1,022,337 + +1.0
1,022,341 + +0.8
1,022,347 + +0.9
1,022,358 + +0.2
1,022,402 - -0.1
1,022,410 + +0.7
1,022,422 + +1.7
1,022,430 + +0.7
1,022,431 - +1.8
1,022,471 - -0.7
1,022,475 - +0.3
1,022,766 - +0.6
1,022,909 - +1.0
1,023,288 - 8809 mRNA_441 0.31 -0.4
1,024,043 + 8809 mRNA_441 0.83 -0.9
1,024,184 - -0.7
1,024,335 + -0.1
1,024,448 - +1.3
1,024,450 - +0.9
1,024,481 + +0.3
1,024,485 - +0.4
1,024,832 + +1.8
1,024,951 + +1.7

Or see this region's nucleotide sequence