Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_501

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8868 and 8869 are separated by 158 nucleotides8869 and 8870 are separated by 410 nucleotides mRNA_500: 8868 - KOG2543 Origin recognition complex, subunit 5, at 1,188,933 to 1,191,266 8868 mRNA_501: 8869 - K11338 RUVBL2, RVB2, INO80J RuvB-like protein 2, at 1,191,425 to 1,193,408 8869 mRNA_502: 8870 - ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089, at 1,193,819 to 1,194,942 8870

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,191,318 + +1.0
1,191,324 + -0.5
1,191,362 + -0.6
1,193,833 + +0.2
1,193,970 - 8870 mRNA_502 0.13 +0.1
1,193,972 - 8870 mRNA_502 0.14 -0.0
1,194,124 + 8870 mRNA_502 0.27 +0.0
1,194,256 - 8870 mRNA_502 0.39 +0.6
1,194,301 - 8870 mRNA_502 0.43 -0.0
1,194,407 - 8870 mRNA_502 0.52 -0.1

Or see this region's nucleotide sequence