Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_554

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8922 and 8923 are separated by 445 nucleotides mRNA_554: 8922 - K13337 PEX19 peroxin-19, at 1,319,460 to 1,321,018 8922 mRNA_555: 8923 - K03115 CSNK2B casein kinase II subunit beta, at 1,321,464 to 1,322,533 8923

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,318,806 + +1.0
1,318,953 - -0.5
1,319,097 + -0.6
1,319,101 - +1.4
1,319,103 - +1.3
1,319,104 - +0.8
1,319,104 - +0.3
1,319,122 + -0.7
1,319,151 - -0.8
1,319,153 - +0.8
1,319,180 + -0.1
1,319,263 - -0.7
1,319,280 + +0.0
1,319,311 + +0.4
1,319,334 + +2.2
1,319,466 + -1.8
1,321,068 + +0.6
1,321,070 + +0.3
1,321,071 + -1.2
1,321,076 - -1.7
1,321,077 - -0.4
1,321,080 - +0.1
1,321,085 - +1.2
1,321,087 + +0.2
1,321,282 + +1.7

Or see this region's nucleotide sequence