Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_627

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8994 and 8995 are separated by 483 nucleotides8995 and 8997 are separated by 260 nucleotides mRNA_626: 8994 - K19423 epsE glycosyltransferase EpsE, at 1,500,844 to 1,503,706 8994 mRNA_627: 8995 - HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,504,190 to 1,505,264 8995 mRNA_629: 8997 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 1,505,525 to 1,506,625 8997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,503,262 + 8994 mRNA_626 0.84 +0.7
1,503,693 - +0.6
1,503,704 + +0.0
1,503,843 + +0.1
1,503,873 - +1.9
1,504,008 - +1.3
1,504,015 - +0.9
1,504,160 + +0.5
1,504,187 - +0.8
1,504,188 + +1.0
1,504,490 + 8995 mRNA_627 0.28 -1.8
1,504,687 + 8995 mRNA_627 0.46 -1.0
1,505,179 - +1.1
1,505,195 + +2.0
1,505,919 + 8997 mRNA_629 0.36 -1.6
1,505,974 + 8997 mRNA_629 0.41 +0.2

Or see this region's nucleotide sequence