Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_635

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9003 and 9004 are separated by 122 nucleotides mRNA_635: 9003 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 1,526,583 to 1,528,432 9003 mRNA_636: 9004 - Hypothetical Protein, at 1,528,555 to 1,529,690 9004

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,526,021 - +0.4
1,526,327 + +0.0
1,526,875 - 9003 mRNA_635 0.16 -0.6
1,527,006 - 9003 mRNA_635 0.23 -1.1
1,527,037 + 9003 mRNA_635 0.25 -1.6
1,527,205 + 9003 mRNA_635 0.34 -0.2
1,527,950 + 9003 mRNA_635 0.74 -1.7
1,528,088 - 9003 mRNA_635 0.81 +1.7
1,528,358 + -0.9
1,528,367 + -1.7
1,528,368 + -1.8
1,528,481 - +0.4
1,528,492 + +1.6
1,528,498 - -0.4
1,528,502 + +0.2
1,528,517 + -0.1
1,528,643 + +0.1
1,528,779 - 9004 mRNA_636 0.20 +2.1
1,528,782 - 9004 mRNA_636 0.20 +1.0
1,528,807 + 9004 mRNA_636 0.22 +0.6
1,528,820 + 9004 mRNA_636 0.23 +2.0
1,528,955 - 9004 mRNA_636 0.35 +1.7

Or see this region's nucleotide sequence