Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_692

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9059 and 9060 are separated by 640 nucleotides9060 and 9061 are separated by 220 nucleotides9061 and 9062 are separated by 18 nucleotides mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1,654,187 to 1,655,230 9059 mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034 9060 mRNA_693: 9061 - Hypothetical Protein, at 1,659,255 to 1,659,647 9061 mRNA_694: 9062 - Hypothetical Protein, at 1,659,666 to 1,660,992 9062

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,655,038 + 9059 mRNA_691 0.82 -1.6
1,655,039 + 9059 mRNA_691 0.82 -0.5
1,655,451 - +1.6
1,655,475 + +0.3
1,655,475 + +1.2
1,655,507 + -0.1
1,655,522 - -0.7
1,655,640 + +0.7
1,655,646 - +1.1
1,655,779 - +0.3
1,655,791 - +0.3
1,655,811 + +0.2
1,655,937 - +0.1
1,655,982 - +0.5
1,656,123 + +1.1
1,656,399 - 9060 mRNA_692 0.17 +0.3
1,656,713 - 9060 mRNA_692 0.27 +0.8
1,657,496 + 9060 mRNA_692 0.51 +2.0
1,657,581 - 9060 mRNA_692 0.54 -2.9
1,657,667 - 9060 mRNA_692 0.57 +0.7
1,657,697 - 9060 mRNA_692 0.58 +1.1
1,658,026 - 9060 mRNA_692 0.68 +0.7
1,658,755 - +0.8
1,659,190 + -0.0
1,659,354 - 9061 mRNA_693 0.25 +0.5
1,659,496 - 9061 mRNA_693 0.61 -2.6
1,659,810 + 9062 mRNA_694 0.11 +1.0
1,659,813 - 9062 mRNA_694 0.11 +1.3

Or see this region's nucleotide sequence