Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_726

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9093 and 9094 are separated by 841 nucleotides9094 and 9095 are separated by 607 nucleotides mRNA_725: 9093 - KOG2702 Predicted panthothenate kinase/uridine kinase-related protein, at 1,725,841 to 1,726,998 9093 mRNA_726: 9094 - HMMPfam-Ferritin-like domain-PF13668, at 1,727,840 to 1,729,202 9094 mRNA_727: 9095 - HMMPfam-Peroxidase, family 2-PF01328,ProSiteProfiles-Heme haloperoxidase family profile.-PS51405,SUPERFAMILY--SSF47571, at 1,729,810 to 1,731,316 9095

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,726,928 + +2.3
1,726,936 - +1.4
1,726,952 + +1.3
1,727,060 - -0.5
1,727,063 - +0.8
1,727,064 - +1.5
1,727,075 + +0.1
1,727,077 - -0.2
1,727,078 - +1.6
1,727,207 - -0.6
1,727,645 + +2.0
1,727,648 - +1.1
1,727,659 + +1.1
1,728,077 + 9094 mRNA_726 0.17 +1.0
1,728,257 - 9094 mRNA_726 0.31 -0.1
1,728,555 - 9094 mRNA_726 0.52 +1.1
1,729,336 + +0.3
1,729,581 - +0.3
1,729,743 + +0.8
1,729,754 + +0.8

Or see this region's nucleotide sequence