Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_850

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9218 and 9219 are separated by 969 nucleotides mRNA_850: 9218 - SUPERFAMILY--SSF52047, at 2,036,866 to 2,038,448 9218 mRNA_851: 9219 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 2,039,418 to 2,042,658 9219

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,035,916 + -1.4
2,035,936 + +0.5
2,035,936 + +0.1
2,035,958 - -0.3
2,035,964 + -0.2
2,036,055 - -0.7
2,036,066 - +2.3
2,036,067 + -1.2
2,036,067 - +0.1
2,036,075 + +0.9
2,036,085 - +0.3
2,036,111 + +0.1
2,036,121 + +2.8
2,036,130 - +0.5
2,036,143 + -0.4
2,036,149 - +1.6
2,036,203 + +0.0
2,036,225 + -0.1
2,036,235 - -1.1
2,036,267 + +0.1
2,036,403 - -0.3
2,036,546 + -1.0
2,036,558 - -0.4
2,036,561 + -1.2
2,036,696 - +0.6
2,036,698 - +0.2
2,036,707 - +1.0
2,036,711 + +2.2
2,036,712 + -0.0
2,036,734 - +0.6
2,036,735 - +1.7
2,036,741 - +0.9
2,036,743 + +0.2
2,036,800 - -0.2
2,036,801 - +2.8
2,036,808 + +0.2
2,036,809 + -0.3
2,036,810 + +0.7
2,036,824 - +0.3
2,036,825 + +1.1
2,036,827 + +0.4
2,036,827 + -0.3
2,036,827 + +0.3
2,036,830 + -0.0
2,036,830 + -0.1
2,036,843 - +0.5
2,036,846 + +1.1
2,036,848 + -1.6
2,036,852 + +0.5
2,036,861 - +1.5
2,036,952 - +0.7
2,036,953 + -0.1
2,036,988 - +0.1
2,037,292 - 9218 mRNA_850 0.27 -0.1
2,037,292 - 9218 mRNA_850 0.27 +0.6
2,037,303 + 9218 mRNA_850 0.28 +0.4
2,038,145 - 9218 mRNA_850 0.81 +1.8
2,038,152 - 9218 mRNA_850 0.81 +1.1
2,038,474 - +0.0
2,038,575 - +1.0
2,038,713 - +0.0
2,038,769 - +0.4
2,038,892 + -0.5
2,039,048 - +0.7
2,039,198 - +0.8

Or see this region's nucleotide sequence